Wind Waker > Twilight Princess > Majora's Mask > Ocarina of Time
And before you say that I can't appreciate older games, let it be remembered that I prefer A Link to the Past to all four of them, and pretty easily at that. It's just the N64 era I find overrated, although with blind playthroughs of Final Fantasy VII and Metal Gear Solid waiting in the wings for me, who knows?
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Currently Playing - Resident Evil 4
Hopefully Next Up - StarCraft, Final Fantasy VII, Resident Evil 2