Here goes:
Paper Mario- 3 or 4
Paper Mario: TTYD- 3
The Wind Waker- 3 (almost 4)
Twilight Princess- 3
Ocarina of Time- 4 or 5
Majora's Mask- 2
Phantom Hourglass- 2
Skyward Sword- 1
Metroid- 1
Super Metroid- 4 or 5
Metroid Prime- 8
Metroid Prime 2- 3 or 4
Metroid Prime 3- 2
Castlevania: DoS- 10+ (with the succubus glitch a few times)
Castlevania: PoR- 4
Castlevania: SotN- 1
SMB1- 1
Mario 3- 4
Mario World- 5?
Mario 64- 3 (but I've never got 120 stars)
Mario Sunshine- 2
Mario Galaxy- 3
Mario Galaxy 2- 1
Bioshock- 2
Bioshock 2- 1
Heavy Rain- 1
Resident Evil 4- 6 or something like that
Resident Evil 5- 1
REmake- 1 (nearly twice)
ICO- 1
Shadow of the Colossus- 2
Mega Man 2- 2
Mega Man X- 1
Donkey Kong Country- 1
Donkey Kong Country 2- 1
Diddy Kong Racing- 2 or 3
F-Zero- 1
F-Zero X- 1
F-Zero GX- 1
Chrono Trigger- 3
Kirby's Adventure- 2
Kirby Canvas Curse- 6
Eternal Darkness- 2
Star Fox 64- 3
Star Fox Assault- 3 or 4