Story: 3 > 4 > 1 > 2
Gameplay: 3 > 4 > 2 > 1
Yep, I'm one of those MGS4 enthusiasts. Still prefer 3 though. But it's close.
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"Mr. Paris, I assume you've had a great deal of experience being rejected by women." ~SCP~
http://img.imgcake.com/Jeffzeropngus.png