For me KH storyline was just an excuse to justify the set pieces and characters being in the same universe. Meaning just a light wrapper of a storyline to exist as some kind of narrative about light vs dark and secretive organizations on either side and some main characters with some basic plot. I did not play KH3 yet though, just the first two and several spin-offs since.
KH storyline never seemed intended to be deeply probed or understood, moreso just appreciated for its themes.
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The Anti Redpill